yup, they're showing now.
you'll have to wait and see once it's together...and check to see if it binds up at all. It shouldn't, but check for resistance once you get it all back together.
Upper and lower shock bearings never last that long anyways....they're so small, and take an extreme amount of punishment.
The best thing(s) you can do are...remove the shock/linkage every once and awhile and re-grease it...keep pressure washing to a minimal around the linkage and anywhere where there's a bearing...and try not to use soaps and degreasers when you wash it...because they will find their way in there, and break down the grease.